# moal r-universe

install.packages("moal",repos=c("https://fdumbioinfo.r-universe.dev","https://cloud.r-project.org"))

help("omic")

# if necessary :

install.packages("moalannotgene",repos=c("https://fdumbioinfo.r-universe.dev"))
install.packages("moalannotensg",repos=c("https://fdumbioinfo.r-universe.dev"))
install.packages("moalannotenst",repos=c("https://fdumbioinfo.r-universe.dev"))
install.packages("moalannotensp",repos=c("https://fdumbioinfo.r-universe.dev"))
install.packages("moalstringdbhs",repos=c("https://fdumbioinfo.r-universe.dev"))
install.packages("moalstringdbmm",repos=c("https://fdumbioinfo.r-universe.dev"))
install.packages("moalstringdbrn",repos=c("https://fdumbioinfo.r-universe.dev"))
install.packages("moalstringdbdr",repos=c("https://fdumbioinfo.r-universe.dev"))
install.packages("moalstringdbss",repos=c("https://fdumbioinfo.r-universe.dev"))
if (!require("BiocManager", quietly = TRUE)){install.packages("BiocManager")}
BiocManager::install("Rgraphviz")

omic workflow :

- QCs : histogram, boxplot, PCA and AHC.
- Differential analysis : anova pairwise comparisons
- Features filtering : volcanoplots, heatmaps, lineplots, boxplots
- Functional analysis : GSEA/ORA on MSigDB and StringDB interaction network

— 

IPA - Ingenuity Pathways Analysis (©Qiagen)

— 

Contacts

florent.dumont universite-paris-saclay.fr
pauline.tran universite-paris-saclay.fr
Tel : 01 8000 61 75

UMS IPSIT- BIOINFO Pluginlabs
Faculté de Pharmacie
RDC Bâtiment Henri MOISSAN - HM1
17, Avenue des Sciences
91400 ORSAY